Representation of BioPlex PPIs in a graph data structure — bioplex2graph • BioPlex

Representation of BioPlex PPIs in a graphNEL object from the graph package.

bioplex2graph(bioplex.df)

Arguments

bioplex.df: a data.frame storing the Bioplex PPIs in a flat from-to format. Typically obtained via getBioPlex.

Value

An object of class graphNEL.

References

BioPlex: https://bioplex.hms.harvard.edu/interactions.php

See also

getBioPlex, ftM2graphNEL

Examples

# (1) Obtain the latest version of the 293T PPI network
bp.293t <- getBioPlex(cell.line = "293T", version = "3.0")
#> Using cached version from 2023-02-26 15:10:40

# (2) Turn the data into a graph 
bp.gr <- bioplex2graph(bp.293t)