Convenient access to 293T transcriptome data from GEO

Functionality for storing the 293T RNA-seq data from GSE122425 in a SummarizedExperiment. The dataset includes three wild type samples and three NSUN2 knockout samples.

getGSE122425(cache = TRUE)

Arguments

cache

logical. Should a locally cached version used if available? Defaults to TRUE.

Value

A SummarizedExperiment storing RNA-seq data for the 293T cell line.

References

GSE122425: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE122425

Examples

  # Obtain the data as a SummarizedExperiment
  se <- getGSE122425()
#> Using cached version from 2023-02-26 15:11:00