Identify CORUM complexes that have a subunit of interest

Source: R/corum.R

Screens a list of graph instances storing CORUM protein complex data for a subunit of choice.

hasSubunit(glist, subunit, id.type = "SYMBOL")

Arguments

glist

A list of graphs storing CORUM complexes. Typically obtained via corum2graphlist.

subunit

character. A gene ID corresponding to the subunit of interest.

id.type

character. Gene ID type of the given subunit. Defaults to "SYMBOL".

Value

A logical vector indicating which graphs have a node with the given subunit.

Examples

# (1) Obtain the core set of CORUM complexes ...
core <- getCorum(set = "core")
#> Using cached version from 2023-02-26 15:10:34

# (2) ... turn into a list of graphs ...
core.glist <- corum2graphlist(core)

# (3) .. check for a particular subunit of interest
has.cdk2 <- hasSubunit(core.glist, subunit = "CDK2")