graph2graphframe.RdRepresentation of BioPlex PPIs in a GraphFrame object
from the graphframes package.
graph2graphframe(gr, spark.con)an object of class graph storing the
BioPlex PPIs. Typically obtained via bioplex2graph.
Spark connection. Typically obtained via
sparklyr::spark_connect.
An object of class GraphFrame.
library(sparklyr)
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library(graphframes)
library(BioPlex)
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# (1) Obtain the latest version of the 293T PPI network
bp.293t <- getBioPlex(cell.line = "293T", version = "3.0")
#> Using cached version from 2023-01-14 23:15:28
# (2) Turn the data into a graph
bp.gr <- bioplex2graph(bp.293t)
# (3) Switch to a graphframes backend
sc <- spark_connect(master = "local", version = "3.0")
#> Warning: 2 arguments not used by format 'spark-3.3.0-bin-hadoop2'
bp.gf <- graph2graphframe(bp.gr, sc)