Systems Immunology Bootcamp
  • Home
  • In-Class Materials
  • Assignments
  • Resources
  1. Sessions
  • Sessions
  • Session 1
    • Variables and Functions
    • Vectors, Types, and Conditional Statements
    • Missing Data and Generators
    • Other Base R Types
  • Session 2
    • Creating Functions
    • For loops
    • Intro to Tidyverse
    • Split-Apply-Combine
    • Reshaping and Joining Data
  • Session 3
    • Session 3: Data Visualization in R
    • Exercise-1
    • Exercise-2: Boxplot
  • Session 4
    • t-test
    • Session 4: Modeling
    • A simple model
    • Model-Building
    • Multi-factor Designs
  • Session 5
    • Working with summarized experimental data
    • Differential expression analysis with DESeq2

Sessions

This set of pages contains the in-class materials we will be using.

You can browse the materials for each Session on this website, but for class you need to download these materials and datasets.

Session 1: Getting started with R

Download Session 1 Materials Here

Session 2: Functions and Data Wrangling

Download Session 2 Materials Here

Session 3: Data Exploration & Visualization

Download Session 4 Materials Here

Session 4: Modeling

Download Session 4 Materials Here

Session 5: Bulk RNA-seq

Download Session 5 Materials Here

Session 6 & 7: scRNA-seq

For session 6 we will be working from the materials found here and data found here