Changelog

Source: NEWS.md

CHANGES IN VERSION 1.0.0

  • Initial release of the scDiagnostics package.

CHANGES IN VERSION 1.4.0

  • Add functionality to process SCE objects for PCA computation via the new processPCA function.
  • Add functionality to downsample SCE objects for diagnostic functions.
  • Add new diagnostic functions (calculateTopLoadingGeneShifts, compareMarkers and calculateMMDPValue).
  • Add graph integration diagnostic function in replacement of nearest neighbor diagnostic, calculateGraphIntegration.
  • Improve regressPC function and plot method, which can now also regress against cell types and batches.
  • Improve normalization for plotMarkerExpression diagnostic function.
  • Improve user control and options for plot methods.
  • Update vignettes to reflect all new changes.